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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13170276_13171126_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13170276 - 13171126
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
ACTGTTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCTCTCTTATCA
Flanking Amino Acid:
VEQVSANHRAETNPTPGQEA
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
78.3
0.7
1
80
32.1
Major PPT
76.9
0.61
0.9
70.1
35.8
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
63.4
0.42
1.6
72.17
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015849
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016530
13168602 - 13182363
13762
ENSAPLT00000016528
13166885 - 13182363
15479