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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13220775_13223129_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13220775 - 13223129
Intron Length:
2355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCGCG
5'SS Class:
major
3'SS Sequence:
GTCTCTGCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
CACACTGTAACC
Flanking Amino Acid:
ICRLLKHPNIVRLHDSISEE
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61
44
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
71
0.47
0.9
65
36.3
Minor 5ss
37.1
-1.5
3.3
48.8
46.9
Minor BPS
47.5
-0.2
2.1
55.52
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014627
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043116
13214057 - 13235589
21533
ENSAPLT00000038067
13214057 - 13235589
21533
ENSAPLT00000015305
13214054 - 13235589
21536