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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13223185_13224679_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13223185 - 13224679
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
CTCTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCAGAC
U12 Branch Point Sequence:
CCTACGTGAGCT
Flanking Amino Acid:
EEGHHYLIFDLHCIQQILEA
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
51.6
0.04
1.1
48.6
36.6
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
43
-0.4
2.3
61.31
48

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014627
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043116
13214057 - 13235589
21533
ENSAPLT00000038067
13214057 - 13235589
21533
ENSAPLT00000015305
13214054 - 13235589
21536