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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13225121_13225594_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13225121 - 13225594
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CTGTCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAC
U12 Branch Point Sequence:
CATGTCACAAGC
Flanking Amino Acid:
EVEGDQQAWFGFAGTPGYLS
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
66.1
0.4
1.2
69.1
37.9
Major PPT
70
0.45
0.9
61.4
40
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
40.4
-0.7
2
47.9
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014627
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015305
13214054 - 13235589
21536
ENSAPLT00000043116
13214057 - 13235589
21533
ENSAPLT00000038067
13214057 - 13235589
21533