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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13225679_13225783_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13225679 - 13225783
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
CCTCCCCGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GACCCCACATCT
Flanking Amino Acid:
YGKAVDLWACGVILYILLVG
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
62.7
43.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
61.3
0.26
1
57.2
33.3
Minor 5ss
29.6
-2.3
2.7
34.6
40.9
Minor BPS
42.5
-0.4
2
57.27
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014627
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043296
13225595 - 13230846
5252
ENSAPLT00000043116
13214057 - 13235589
21533
ENSAPLT00000038067
13214057 - 13235589
21533
ENSAPLT00000015305
13214054 - 13235589
21536