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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13225879_13225962_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13225879 - 13225962
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
CTTTGCTCGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CTGTCCCCACTC
Flanking Amino Acid:
YQQIKAGAYDFPSPEWDTVT
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.9
37.3
Major BPS
64.9
0.37
1
67
29.8
Major PPT
73.4
0.53
1
69.5
36.8
Minor 5ss
30
-2.3
3.1
37.2
40.3
Minor BPS
43.9
-0.4
2.1
54.82
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014627
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043116
13214057 - 13235589
21533
ENSAPLT00000038067
13214057 - 13235589
21533
ENSAPLT00000015305
13214054 - 13235589
21536