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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13227497_13228969_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13227497 - 13228969
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
CTCCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CTCTCCTGACCT
Flanking Amino Acid:
TTMLATRNFSGGKSGGNKKN
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
81.1
0.7
0.7
72.7
32.1
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
59.6
0.38
1.8
76.42
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014627
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043296
13225595 - 13230846
5252