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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13234190_13235294_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13234190 - 13235294
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
AGCCTAACCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
ATTTACTCAGCC
Flanking Amino Acid:
AISNGDFESYTISPSQIEEP
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.3
72.2
39.5
Major BPS
66.4
0.41
1
59
37.6
Major PPT
59.1
0.21
1
48.2
38.9
Minor 5ss
32.2
-2
3.3
39.4
39.8
Minor BPS
53
0.07
2
70.71
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014627
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043116
13214057 - 13235589
21533
ENSAPLT00000038067
13214057 - 13235589
21533