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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13244065_13244160_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13244065 - 13244160
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGGGT
5'SS Class:
major
3'SS Sequence:
CTCCATCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCCCTCTCCATC
Flanking Amino Acid:
ATCLVVTRVYGIKRFCRDIH
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
62.2
42.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
70.6
0.46
0.8
61.4
34.7
Minor 5ss
37.2
-1.5
3.6
52.2
46.9
Minor BPS
44.1
-0.4
1.9
50.84
40.8

Associated Gene:

Gene:
SLC6A7
Ensembl Gene ID:
ENSAPLG00000014083
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014684
13242780 - 13252369
9590