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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13244261_13244392_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13244261 - 13244392
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGCCAG
U12 Branch Point Sequence:
CCTTGTTCCACA
Flanking Amino Acid:
FLMGLILTTEGGMYWLVLLD
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
69.5
42.7
Major BPS
41.9
-0.5
1.6
49.9
45.3
Major PPT
77.5
0.62
0.8
71.6
33
Minor 5ss
27
-2.6
3.3
38.6
46.5
Minor BPS
42.9
-0.5
2.3
54.34
45

Associated Gene:

Gene:
SLC6A7
Ensembl Gene ID:
ENSAPLG00000014083
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014684
13242780 - 13252369
9590