About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13244525_13244610_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13244525 - 13244610
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTTAG
U12 Branch Point Sequence:
TTGTCCTTTCCG
Flanking Amino Acid:
MLLTLGLDSQFAFMETIVTA
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
43.9
-0.3
1.6
37.1
44.2
Major PPT
77.9
0.63
0.9
72.8
32
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
44.8
-0.5
3.7
67.33
46.2

Associated Gene:

Gene:
SLC6A7
Ensembl Gene ID:
ENSAPLG00000014083
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014684
13242780 - 13252369
9590