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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13246752_13247325_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13246752 - 13247325
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CCTTCTTTACCC
Flanking Amino Acid:
AVWKISPLFKGVGMGTILIV
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66
39.9
Major BPS
74
0.6
1
65.6
41.1
Major PPT
81.2
0.7
0.7
72.9
32
Minor 5ss
26.5
-2.7
3.1
32.3
42.4
Minor BPS
63.5
0.4
1.7
69.26
43

Associated Gene:

Gene:
SLC6A7
Ensembl Gene ID:
ENSAPLG00000014083
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014684
13242780 - 13252369
9590