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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13247458_13247935_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13247458 - 13247935
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGCTC
5'SS Class:
major
3'SS Sequence:
TAACTTCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
FPYRAYTNGGGAFLVPYFIM
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
58.9
46
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.1
0.57
0.9
69.6
36.1
Minor 5ss
39.8
-1.1
3.6
59.2
45.5
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
SLC6A7
Ensembl Gene ID:
ENSAPLG00000014083
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014684
13242780 - 13252369
9590