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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13290866_13292255_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13290866 - 13292255
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCTTCCTAATCC
Flanking Amino Acid:
RDSNYISKGSTFLPLKWMAP
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
90.1
0.9
0.6
89
20
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
60.9
0.32
2
73.85
43.3

Associated Gene:

Gene:
PDGFRB
Ensembl Gene ID:
ENSAPLG00000013101
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017202
13280865 - 13294113
13249
ENSAPLT00000013696
13271616 - 13294113
22498