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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13308832_13309464_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13308832 - 13309464
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAA
U12 Branch Point Sequence:
TCTGCCTGACAG
Flanking Amino Acid:
DIKWVTAAKNVRSTKIPTFV
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
55.8
0.14
1.3
68.1
38
Major PPT
69.5
0.44
1
64.3
36.7
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
46
-0.4
2
53.15
47.2

Associated Gene:

Gene:
CSF1R
Ensembl Gene ID:
ENSAPLG00000013023
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013560
13307008 - 13320076
13069