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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13309625_13310156_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13309625 - 13310156
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATCCATCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGGTCATGATCT
Flanking Amino Acid:
KNASTMLRVVERGYILLTPV
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.5
33.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.5
0.53
0.9
66.3
34.8
Minor 5ss
31.5
-2.1
3
42.7
44.3
Minor BPS
49.1
0.01
2
71.25
44.9

Associated Gene:

Gene:
CSF1R
Ensembl Gene ID:
ENSAPLG00000013023
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013560
13307008 - 13320076
13069