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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13311552_13311756_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13311552 - 13311756
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CCTTCCCCCACA
Flanking Amino Acid:
ASINFSISVKSPPRVCNVWV
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
75.2
0.57
0.7
68.6
25.2
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
45.5
-0.3
2.3
59.96
45.8

Associated Gene:

Gene:
CSF1R
Ensembl Gene ID:
ENSAPLG00000013023
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013560
13307008 - 13320076
13069