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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13311878_13312176_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13311878 - 13312176
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GGTGTCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGAGAA
U12 Branch Point Sequence:
CTCTCCTTTTCT
Flanking Amino Acid:
EWYQCPTYSDRYNEDYKLLL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
44
-0.3
1
34.1
31.6
Major PPT
73.6
0.53
1
66.1
40.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
44.9
-0.3
3.6
75.7
46.9

Associated Gene:

Gene:
CSF1R
Ensembl Gene ID:
ENSAPLG00000013023
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013560
13307008 - 13320076
13069