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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13316198_13316477_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13316198 - 13316477
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATCC
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CACTTCTTAACA
Flanking Amino Acid:
VNLLGACTYGGPILVITEYC
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.5
36.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
73.5
0.53
0.8
64.6
36.5
Minor 5ss
37.8
-1.4
3.3
51.1
45.6
Minor BPS
72.7
0.71
1.3
71.72
40.6

Associated Gene:

Gene:
CSF1R
Ensembl Gene ID:
ENSAPLG00000013023
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013560
13307008 - 13320076
13069