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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13316641_13317207_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13316641 - 13317207
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TGCTCTCTGACT
Flanking Amino Acid:
NIDLEKKYIRSDSGFASQGL
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
70.5
0.46
0.9
68.8
36.2
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
59.9
0.39
1.7
76.58
40.1

Associated Gene:

Gene:
CSF1R
Ensembl Gene ID:
ENSAPLG00000013023
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013560
13307008 - 13320076
13069