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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13319035_13319668_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13319035 - 13319668
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGGGCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAA
U12 Branch Point Sequence:
AGCATTGCAACA
Flanking Amino Acid:
MARPDFAPLEMYTIMQACWS
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
76.1
34.8
Major BPS
57
0.18
1.3
69.4
37.7
Major PPT
68.2
0.41
1.1
61.7
44.4
Minor 5ss
32.1
-2
2.7
37.9
40
Minor BPS
40.5
-0.7
2
46.63
37

Associated Gene:

Gene:
CSF1R
Ensembl Gene ID:
ENSAPLG00000013023
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013560
13307008 - 13320076
13069