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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13319775_13319944_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13319775 - 13319944
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TTTGCTTTCAAG
Flanking Amino Acid:
QKELEMHKEQDQTNLPSTAE
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
61.1
0.28
1
67
29.8
Major PPT
77.5
0.62
1
75.7
38.5
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
50.1
-0.1
2
63.96
44.2

Associated Gene:

Gene:
CSF1R
Ensembl Gene ID:
ENSAPLG00000013023
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013560
13307008 - 13320076
13069