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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13327365_13327977_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13327365 - 13327977
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TTGTGTTTGACC
Flanking Amino Acid:
ENVLALKNIEFTWPEFLASS
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
80.7
0.69
0.8
73.6
37
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
61.9
0.36
1.8
73.02
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005491
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005714
13323975 - 13335250
11276