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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13328574_13329200_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13328574 - 13329200
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTGTTTTAACT
Flanking Amino Acid:
ALHSFMDIYTGLFNVGNKLL
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.3
0.64
0.9
71.6
38.3
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
71.4
0.75
1.4
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005491
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005714
13323975 - 13335250
11276