Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13329329_13330780_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13329329 - 13330780

Intron Length:

1452

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGATTC

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTGTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTAAC

U12 Branch Point Sequence:

TTGTCTGTTACA

Flanking Amino Acid:

CNSPLFKGGQNSLAGPQECW

Intron Amino Acid Position:

346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

78.8

29.4

Major BPS

59.3

0.23

1.3

63.6

40.3

Major PPT

81.8

0.72

0.9

Minor 5ss

44.2

-0.6

3.1

60.1

38.6

Minor BPS

50.4

0.01

2.3

70.62

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005491

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005714

13323975 - 13335250

11276