Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13332920_13333415_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13332920 - 13333415

Intron Length:

496

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCATTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAA

U12 Branch Point Sequence:

TCACGGTTAACA

Flanking Amino Acid:

SYKYSCTVTLDLGLATSRGR

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

82.4

29.7

Major BPS

61.8

0.29

1.1

69.7

35.6

Major PPT

76.6

0.6

66.8

43.8

Minor 5ss

34.1

-1.8

3.2

46.4

Minor BPS

-0.2

2.4

61.37

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005491

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005714

13323975 - 13335250

11276