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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13333507_13334094_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13333507 - 13334094
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGA|GCAAAAGGT
5'SS Class:
weak_major
3'SS Sequence:
TCTAGCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TCTGCTTTCAAT
Flanking Amino Acid:
QAVLQPPSAEDTLPNSASQV
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.5
0.08
1.3
60.1
41.3
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
72
0.49
0.9
64.7
36.4
Minor 5ss
22.5
-3.2
4.2
34.2
42.8
Minor BPS
51.1
0.12
2
72.3
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005491
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005714
13323975 - 13335250
11276