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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13334186_13334505_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13334186 - 13334505
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACCTAACC
Flanking Amino Acid:
ASKRQAFANTDKHPPVRTSG
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.9
33
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
77.1
0.61
1
75.7
33.2
Minor 5ss
36.5
-1.5
3.1
45.8
43.6
Minor BPS
63
0.39
1.9
76.47
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005491
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005714
13323975 - 13335250
11276