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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13334682_13335023_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13334682 - 13335023
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTCTTTCCAATT
Flanking Amino Acid:
SPNTSAKKPVGIDAPAAAHK
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.5
32.2
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
83
0.74
0.7
81.2
30.9
Minor 5ss
34.6
-1.8
2.8
35.2
41.4
Minor BPS
49.5
0.04
1.8
71.91
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005491
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005714
13323975 - 13335250
11276