About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13335820_13340210_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13335820 - 13340210
Intron Length:
4391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCAATTTAATC
Flanking Amino Acid:
AKLEKEGLDPLPLVPH*
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.5
0.44
1
61.7
44.5
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
54.1
0.11
1.5
60.57
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021315
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032571
13335799 - 13340949
5151