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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13345147_13348700_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13345147 - 13348700
Intron Length:
3554

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GACAGTGTCATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAATATTCAAGG
Flanking Amino Acid:
AFARLKNDLQNDNSASNRHQ
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
73.9
32.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
53.7
0.08
1
45.3
41.1
Minor 5ss
30.9
-2.2
3.9
40.3
40.1
Minor BPS
43.3
-0.6
1.9
45.28
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018926
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028135
13344981 - 13348765
3785