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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_1339582_1365420_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1339582 - 1365420
Intron Length:
25839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTAC
5'SS Class:
weak_major
3'SS Sequence:
TTATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTACAG
Flanking Amino Acid:
NEKLRMDVNKMDPHENILLS
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
71
35.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.3
0.88
0.7
84.4
30.3
Minor 5ss
57.5
0.25
2
69.7
41.2
Minor BPS
58.1
0.12
1.8
65.42
42.2

Associated Gene:

Gene:
GABRB2
Ensembl Gene ID:
ENSAPLG00000013041
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045901
1337553 - 1497996
160444
ENSAPLT00000041017
1339234 - 1574652
235419
ENSAPLT00000022851
1339234 - 1497996
158763
ENSAPLT00000013571
1339234 - 1483298
144065