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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13399422_13405618_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13399422 - 13405618
Intron Length:
6197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCATGTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCACCCCAAAGC
Flanking Amino Acid:
NAKDTLTITCRGQHPLEWSW
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
67
0.38
1
57.8
42.3
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
42.9
-0.5
2.2
53.22
44

Associated Gene:

Gene:
FLT4
Ensembl Gene ID:
ENSAPLG00000005955
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006166
13399288 - 13432652
33365