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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13410002_13410864_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13410002 - 13410864
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TCTCATTTCACT
Flanking Amino Acid:
IPDLNVTLILQNSLIHPDRK
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
70.4
33.4
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
91.2
0.93
0.7
84.6
36
Minor 5ss
27.8
-2.6
3.3
36.6
41.5
Minor BPS
52.2
0.15
2
73.99
42.9

Associated Gene:

Gene:
FLT4
Ensembl Gene ID:
ENSAPLG00000005955
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006166
13399288 - 13432652
33365