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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13411460_13412010_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13411460 - 13412010
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGCA
5'SS Class:
major
3'SS Sequence:
AATCTCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATATCTTTCACA
Flanking Amino Acid:
RFQWTYPGKQTQRAVIEPER
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.7
39.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
65.7
0.35
1
56.9
39
Minor 5ss
28.5
-2.5
3.6
39.4
46
Minor BPS
65.1
0.47
1.7
74.44
37.2

Associated Gene:

Gene:
FLT4
Ensembl Gene ID:
ENSAPLG00000005955
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006166
13399288 - 13432652
33365