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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13412180_13412884_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13412180 - 13412884
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCATAC
U12 Branch Point Sequence:
TCCTCCATACTC
Flanking Amino Acid:
LEESTDVIVHEKPFINVEWR
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.8
41
Major BPS
51.7
0.04
1.1
48.9
36.2
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
44.3
-0.6
2.9
56
43.7
Minor BPS
50.1
-0
1.9
62.54
43.6

Associated Gene:

Gene:
FLT4
Ensembl Gene ID:
ENSAPLG00000005955
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006166
13399288 - 13432652
33365