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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13416637_13419268_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13416637 - 13419268
Intron Length:
2632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCTTCCTAACT
Flanking Amino Acid:
WVEFVEGRNKTVSKLAIQEA
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71.2
0.48
0.9
63.4
32.8
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
65.4
0.56
1.7
79.84
42.4

Associated Gene:

Gene:
FLT4
Ensembl Gene ID:
ENSAPLG00000005955
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006166
13399288 - 13432652
33365