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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13427269_13427641_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13427269 - 13427641
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AAACCTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTCAAACCT
Flanking Amino Acid:
GVLLWEIFSLGASPYPGVQI
Intron Amino Acid Position:
1117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
64.2
0.32
0.9
59.9
36.8
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
46.8
-0.1
2.2
71.76
45.4

Associated Gene:

Gene:
FLT4
Ensembl Gene ID:
ENSAPLG00000005955
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006166
13399288 - 13432652
33365