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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13430139_13430934_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13430139 - 13430934
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTACTGATAACT
Flanking Amino Acid:
MTHTMYKAHPDNQTDSGMVL
Intron Amino Acid Position:
1273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.1
0.72
0.8
73.3
37.2
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
48.7
-0
2.3
75.1
41.2

Associated Gene:

Gene:
FLT4
Ensembl Gene ID:
ENSAPLG00000005955
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006166
13399288 - 13432652
33365