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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13449020_13460890_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13449020 - 13460890
Intron Length:
11871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAATATGAATT
Flanking Amino Acid:
SEEPVTMTHQGTGDIVAVMI
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.7
79.2
26.5
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
48.1
-0
1.7
65.08
38.8

Associated Gene:

Gene:
RNF130
Ensembl Gene ID:
ENSAPLG00000007959
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045965
13439106 - 13479089
39984
ENSAPLT00000008298
13439106 - 13479225
40120