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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13474152_13479073_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13474152 - 13479073
Intron Length:
4922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TTTAAGATAACT
Flanking Amino Acid:
RSGEINIAVTKQNGIEEMLS
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
75.5
0.57
0.8
68.9
31.7
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
48.1
-0
2.4
79.09
42.3

Associated Gene:

Gene:
RNF130
Ensembl Gene ID:
ENSAPLG00000007959
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008298
13439106 - 13479225
40120