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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13476317_13479073_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13476317 - 13479073
Intron Length:
2757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTGCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
TTTAAGATAACT
Flanking Amino Acid:
IKATASLNANEAEWY*
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
75.5
0.57
0.8
68.9
31.7
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
48.1
-0
2.4
79.09
42.3

Associated Gene:

Gene:
RNF130
Ensembl Gene ID:
ENSAPLG00000007959
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045965
13439106 - 13479089
39984