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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13486305_13486373_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13486305 - 13486373
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCTTGAAAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCTGCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
ACTCTGGTAAAA
Flanking Amino Acid:
HCPSPCYFSESQSGCCFPLF
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.4
55.4
37.3
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
68.1
0.41
1.1
67.8
38
Minor 5ss
26.6
-2.7
3.6
32.7
35.7
Minor BPS
39.6
-0.7
2.5
51.58
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007868
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008166
13486248 - 13494430
8183