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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13492303_13492642_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13492303 - 13492642
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
CTCCCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GAATGAGCAATT
Flanking Amino Acid:
KDPDYVRKGSARLPLKWMAP
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
62.4
37.7
Major BPS
69.6
0.49
1
59.5
39
Major PPT
78.8
0.65
0.7
72.8
25.4
Minor 5ss
30.5
-2.2
3.1
36.8
40.4
Minor BPS
36.3
-0.9
2.4
52.43
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007868
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008166
13486248 - 13494430
8183