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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13492766_13493251_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13492766 - 13493251
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCCCTCTGATTT
Flanking Amino Acid:
RGMEFLASRKCIHRDLAARN
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
79
0.72
1
69
38.9
Major PPT
74.8
0.56
1
70.3
41.3
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
47.2
-0.1
1.7
61.31
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007868
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008166
13486248 - 13494430
8183