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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13493409_13494290_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13493409 - 13494290
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCA|GCCAGGAAA
5'SS Class:
weak_major
3'SS Sequence:
CCTGTAGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTATTTGTATCC
Flanking Amino Acid:
EGFSPYREDMQEGQGGQETT
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.4
56.2
41.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
63
0.29
0.9
54
40.5
Minor 5ss
18.9
-3.6
3.6
27.9
37
Minor BPS
48.2
-0.1
2.2
66.08
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007868
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008166
13486248 - 13494430
8183