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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13514507_13515125_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13514507 - 13515125
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACT
Flanking Amino Acid:
CFYSFLLGKEVTLVIQWVDV
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.1
30.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
36
-1.6
2.9
40.8
45.4
Minor BPS
81.9
1.08
1
90.89
33.1

Associated Gene:

Gene:
TBC1D9B
Ensembl Gene ID:
ENSAPLG00000008106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015385
13510027 - 13527561
17535
ENSAPLT00000008473
13510027 - 13527561
17535