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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13515385_13516036_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13515385 - 13516036
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
TACTCTCTACTT
Flanking Amino Acid:
KPLKNISALKRDLDARAKNE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.8
83.1
28.7
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
80.3
0.68
0.8
73.1
37
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
49.3
0.03
1.9
69.2
42.4

Associated Gene:

Gene:
TBC1D9B
Ensembl Gene ID:
ENSAPLG00000008106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015385
13510027 - 13527561
17535
ENSAPLT00000008473
13510027 - 13527561
17535