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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13518338_13519084_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13518338 - 13519084
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGCCAACAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGTATTTAATG
Flanking Amino Acid:
FRNPTIGYCQAMNIVTSVLL
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
50.7
0.02
1
44.7
35.5
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
58.1
0.12
1.6
59.52
43.1

Associated Gene:

Gene:
TBC1D9B
Ensembl Gene ID:
ENSAPLG00000008106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015385
13510027 - 13527561
17535
ENSAPLT00000008473
13510027 - 13527561
17535