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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_13519203_13519620_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13519203 - 13519620
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GAGTTCTGACAT
Flanking Amino Acid:
LPDYYNTRVVGALVDQGIFE
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.3
0.82
0.7
79.8
32.2
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
46.1
-0.2
1.8
59.85
43

Associated Gene:

Gene:
TBC1D9B
Ensembl Gene ID:
ENSAPLG00000008106
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015385
13510027 - 13527561
17535
ENSAPLT00000008473
13510027 - 13527561
17535